Nigeria has transitioned from pre-shipment inspection to destination inspection for imports, requiring all goods to be inspected upon arrival. This has contributed to delays in cargo clearance due to inefficiencies and limited use of available technology. Despite significant investments in scanners, many devices remain underutilized or in disrepair. The Nigerian Customs Service (NCS) continues to face challenges such as corruption and inefficiencies, impacting trade facilitation efforts.

Recent reforms under the Nigeria Customs Service Act, 2023, aim to streamline customs processes. Initiatives include improving port decongestion and implementing a 48-hour cargo clearance system. Efforts to increase the use of scanners, especially at major ports like Apapa, are underway to reduce manual inspections. Additionally, the NCS is prioritizing the Authorized Economic Operators (AEO) program to facilitate faster clearance for compliant traders.

The Single Window Portal and the Pre-Arrival Assessment Report (PAAR) system remain critical tools for simplifying customs processes. Both systems allow traders to submit documentation online and receive clearance more efficiently. However, consistent delays persist due to congestion, insufficient infrastructure, and challenges in implementing digital solutions fully. To address these, the NCS is working with stakeholders to enhance scanner utilization and overall automation of the clearance process​in the country.